BLAZE analysis

This page contains the scripts/codes accociated to the analysis in manuscript “Identification of cell barcodes from long-read sc-RNAseq with BLAZE”.

Analysis on whitelists from different tools with the following datasets:

• scmixology 2
• hiPSC GridION Q20 kit
• hiPSC GridION LSK110 kit
• hiPSC PromethION LSK110 kit
• Simulated data

  Downstream analysis

  Umap plot for the following dataset

• scmixology 2
• hiPSC GridION Q20 kit
• hiPSC GridION LSK110 kit
• hiPSC PromethION LSK110 kit

Marker gene

Empty drops analysis:

• Empty drops analysis for SCMIXOLOGY data
• Empty drops analysis for SCMIXOLOGY data (filter out barcodes with <1000 features in sockeye)
• Empty drops analysis for hiPSC PromethION data